Aggregation of individual single sample results into tables, charts, etc
Outside of the metadata key-value store, is there a way of easily aggregating all results of the same type from the same pipeline into a table, chart, or some other output?
- Take all individual MLST allele calls for each sample and output a table of MLST allele calls for each sample (each row is a sample with its MLST allele calls).
- Take the top refseq_masher/Kraken species/genus result for each sample in a selection and output a table.
If the results from a pipeline follow the sample -> field/type -> result format, it should be possible to aggregate results from multiple compatible pipelines into a single table (e.g. MLST allele calls, AMR gene predictions, species classification results, etc all in the same table).
This is similar to how Enterobase presents their analysis data (labeled as "Experimental Data") alongside other tabular data.