Commit 29d03cbd authored by Peter Kruczkiewicz's avatar Peter Kruczkiewicz

Changed *.html to *.html.zip to match file format of files downloaded from Galaxy

Changed order of pipeline outputs
parent af783dcb
Pipeline #7604 canceled with stage
in 20 minutes and 41 seconds
......@@ -69,26 +69,26 @@
</parameter>
</parameters>
<outputs>
<output name="quast.tsv" fileName="quast.tsv"/>
<output name="prokka.txt" fileName="prokka.txt"/>
<output name="contigs.fasta" fileName="contigs.fasta"/>
<output name="prokka.tsv" fileName="prokka.tsv"/>
<output name="quast.tsv" fileName="quast.tsv"/>
<output name="quast.html" fileName="quast.html"/>
<output name="quast-contig_size_viewer.html" fileName="quast-contig_size_viewer.html"/>
<output name="prokka.gbk" fileName="prokka.gbk"/>
<output name="contigs.fastg" fileName="contigs.fastg"/>
<output name="prokka.gff" fileName="prokka.gff"/>
<output name="prokka.faa" fileName="prokka.faa"/>
<output name="prokka.fna" fileName="prokka.fna"/>
<output name="prokka.ffn" fileName="prokka.ffn"/>
<output name="prokka.faa" fileName="prokka.faa"/>
<output name="prokka.fsa" fileName="prokka.fsa"/>
<output name="prokka.sqn" fileName="prokka.sqn"/>
<output name="prokka.tbl" fileName="prokka.tbl"/>
<output name="prokka.txt" fileName="prokka.txt"/>
<output name="prokka.log" fileName="prokka.log"/>
<output name="prokka.err" fileName="prokka.err"/>
<output name="prokka.fna" fileName="prokka.fna"/>
<output name="prokka.fsa" fileName="prokka.fsa"/>
<output name="shovill.log" fileName="shovill.log"/>
<output name="contigs.fastg" fileName="contigs.fastg"/>
<output name="quast.html.zip" fileName="quast.html.zip"/>
<output name="quast-contig_size_viewer.html.zip" fileName="quast-contig_size_viewer.html.zip"/>
<output name="quast.pdf" fileName="quast.pdf"/>
<output name="shovill.log" fileName="shovill.log"/>
<output name="quast.log" fileName="quast.log"/>
<output name="prokka.log" fileName="prokka.log"/>
<output name="prokka.err" fileName="prokka.err"/>
</outputs>
<toolRepositories>
<repository>
......
......@@ -205,7 +205,7 @@
},
"RenameDatasetActioncontig_size_viewer": {
"action_arguments": {
"newname": "quast-contig_size_viewer.html"
"newname": "quast-contig_size_viewer.html.zip"
},
"action_type": "RenameDatasetAction",
"output_name": "contig_size_viewer"
......@@ -226,7 +226,7 @@
},
"RenameDatasetActionreport_html": {
"action_arguments": {
"newname": "quast.html"
"newname": "quast.html.zip"
},
"action_type": "RenameDatasetAction",
"output_name": "report_html"
......
......@@ -69,26 +69,26 @@
</parameter>
</parameters>
<outputs>
<output name="quast-contig_size_viewer.html" fileName="quast-contig_size_viewer.html"/>
<output name="quast.log" fileName="quast.log"/>
<output name="quast.tsv" fileName="quast.tsv"/>
<output name="quast.html" fileName="quast.html"/>
<output name="quast.pdf" fileName="quast.pdf"/>
<output name="shovill.log.zip" fileName="shovill.log.zip"/>
<output name="prokka.txt.zip" fileName="prokka.txt.zip"/>
<output name="contigs.fasta.zip" fileName="contigs.fasta.zip"/>
<output name="prokka.tsv.zip" fileName="prokka.tsv.zip"/>
<output name="prokka.gbk.zip" fileName="prokka.gbk.zip"/>
<output name="contigs.fastg.zip" fileName="contigs.fastg.zip"/>
<output name="prokka.gff.zip" fileName="prokka.gff.zip"/>
<output name="prokka.gbk.zip" fileName="prokka.gbk.zip"/>
<output name="prokka.fna.zip" fileName="prokka.fna.zip"/>
<output name="prokka.faa.zip" fileName="prokka.faa.zip"/>
<output name="prokka.ffn.zip" fileName="prokka.ffn.zip"/>
<output name="prokka.sqn.zip" fileName="prokka.sqn.zip"/>
<output name="prokka.faa.zip" fileName="prokka.faa.zip"/>
<output name="prokka.fsa.zip" fileName="prokka.fsa.zip"/>
<output name="prokka.sqn.zip" fileName="prokka.sqn.zip"/>
<output name="prokka.tbl.zip" fileName="prokka.tbl.zip"/>
<output name="prokka.tsv.zip" fileName="prokka.tsv.zip"/>
<output name="prokka.err.zip" fileName="prokka.err.zip"/>
<output name="prokka.txt.zip" fileName="prokka.txt.zip"/>
<output name="quast.html.zip" fileName="quast.html.zip"/>
<output name="quast-contig_size_viewer.html.zip" fileName="quast-contig_size_viewer.html.zip"/>
<output name="quast.pdf" fileName="quast.pdf"/>
<output name="shovill.log.zip" fileName="shovill.log.zip"/>
<output name="quast.log" fileName="quast.log"/>
<output name="prokka.log.zip" fileName="prokka.log.zip"/>
<output name="prokka.err.zip" fileName="prokka.err.zip"/>
</outputs>
<toolRepositories>
<repository>
......
......@@ -189,7 +189,7 @@
},
"RenameDatasetActioncontig_size_viewer": {
"action_arguments": {
"newname": "quast-contig_size_viewer.html"
"newname": "quast-contig_size_viewer.html.zip"
},
"action_type": "RenameDatasetAction",
"output_name": "contig_size_viewer"
......@@ -210,7 +210,7 @@
},
"RenameDatasetActionreport_html": {
"action_arguments": {
"newname": "quast.html"
"newname": "quast.html.zip"
},
"action_type": "RenameDatasetAction",
"output_name": "report_html"
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment