Commit 1c229518 authored by Dan Fornika's avatar Dan Fornika

Documentation updates

parent c94898d9
......@@ -60,7 +60,7 @@ A Galaxy workflow and some test data has been included with this documentation t
![dataset-pair-screen][]
4. This should have properly paired your data and named the sample **AE014613-699860**. Enter the name of this paired dataset collection at the bottom and click **Create list**.
5. Run the uploaded workflow by clicking on **Workflow**, clicking on the name of the workflow **SISTR Analyze Reads v0.1 (imported from uploaded file)** and clicking **Run**. This should auto fill in the dataset collection. At the very bottom of the screen click **Run workflow**.
5. Run the uploaded workflow by clicking on **Workflow**, clicking on the name of the workflow **MentaLiST MLST v0.1 (imported from uploaded file)** and clicking **Run**. This should auto fill in the dataset collection. At the very bottom of the screen click **Run workflow**.
6. If everything was installed correctly, you should see each of the tools run successfully (turn green). On completion this should look like.
![workflow-success][]
......@@ -79,6 +79,10 @@ If everything was successfull then all dependencies for this pipeline have been
[mentalist-database-available]: ../test/mentalist/images/mentalist-database-available.png
[MentaLiST Galaxy Workflow]: ../test/mentalist/mentalist.ga
[test/reads]: ../test/sistr/reads
[upload-icon]: ../test/mentalist/images/upload-icon.png
[upload-history]: ../test/mentalist/images/upload-history.png
[datasets-icon]: ../test/mentalist/images/datasets-icon.jpg
[datasets-icon]: ../test/mentalist/images/datasets-icon.png
[dataset-pair-screen]: ../test/mentalist/images/dataset-pair-screen.png
[workflow-success]: ../test/mentalist/images/workflow-success.png
[view-details-icon]: ../test/mentalist/images/view-details-icon.png
[conda]: https://conda.io/docs/
......@@ -2,7 +2,7 @@
"a_galaxy_workflow": "true",
"annotation": "",
"format-version": "0.1",
"name": "mentalist_call (imported from API)",
"name": "MentaLiST MLST v0.1",
"steps": {
"0": {
"annotation": "",
......
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