Commit 84cfb86b authored by Philip Mabon's avatar Philip Mabon

Merge branch 'changelog' into 'development'

Changelog

See merge request !62
parents 47f0ea29 72a75405
Pipeline #5212 passed with stage
in 13 minutes and 20 seconds
# Changes
## 1.8.1
* Re-structured repository to use a `Makefile.PL` for handling installation/dependency checking. For integration with Bioconda.
* Added `install_deps.sh` script for installing dependencies.
* Removed copy of `bcftools` code in this repository for compiling plugins and instead use official distribution.
* Added `--out_strains` option to `verify_mapping_quality.pl` to produce a list of only the strain/sample names which did not pass the minimum coverage checks.
......@@ -40,7 +40,7 @@ Script will download and compile in the current working directory [bcftools](htt
```bash
git clone https://irida.corefacility.ca/analysis-pipelines/snvphyl-tools.git
git clone https://github.com/phac-nml/snvphyl-tools.git
cd snvphyl-tools
./install_deps.sh
#wait patiently to completion and setup the following environment variables
......
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