Commit c827f786 authored by Aaron Petkau's avatar Aaron Petkau

Update citations

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Pipeline #4544 passed with stage
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......@@ -52,7 +52,7 @@ Please see <http://snvphyl.readthedocs.io/en/latest/install/docker/> for more de
# Citation
Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S. Katz, Celine Nadon, Aleisha Reimer, Eduardo Taboada, Robert G. Beiko, William Hsiao, Fiona Brinkman, Morag Graham, The IRIDA Consortium, Gary Van Domselaar. 2016. [SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology](http://biorxiv.org/content/early/2016/12/10/092940). bioRxiv doi: http://dx.doi.org/10.1101/092940.
Petkau A, Mabon P, Sieffert C, Knox N, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz L, Nadon C, Reimer A, Taboada E, Beiko R, Hsiao W, Brinkman F, Graham M, Van Domselaar G. [SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology](http://dx.doi.org/10.1099/mgen.0.000116). 08/06/2017. *M Gen* (online ahead of inclusion in an Issue). doi: [10.1099/mgen.0.000116](https://doi.org/10.1099/mgen.0.000116).
# Legal
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# Citation
Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S. Katz, Celine Nadon, Aleisha Reimer, Eduardo Taboada, Robert G. Beiko, William Hsiao, Fiona Brinkman, Morag Graham, The IRIDA Consortium, Gary Van Domselaar. 2016. [SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology](http://biorxiv.org/content/early/2016/12/10/092940). bioRxiv doi: http://dx.doi.org/10.1101/092940.
Petkau A, Mabon P, Sieffert C, Knox N, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz L, Nadon C, Reimer A, Taboada E, Beiko R, Hsiao W, Brinkman F, Graham M, Van Domselaar G. [SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology](http://dx.doi.org/10.1099/mgen.0.000116). 08/06/2017. *M Gen* (online ahead of inclusion in an Issue). doi: [10.1099/mgen.0.000116](https://doi.org/10.1099/mgen.0.000116).
# Additional comparisons with other pipelines
Katz Lee S., Griswold Taylor, Williams-Newkirk Amanda J., Wagner Darlene, Petkau Aaron, Sieffert Cameron, Van Domselaar Gary, Deng Xiangyu, Carleton Heather A. [A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens](https://doi.org/10.3389/fmicb.2017.00375). *Front Microbiol* 2017;8:375. doi: [10.3389/fmicb.2017.00375](https://doi.org/10.3389/fmicb.2017.00375).
# Contact
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