Commit 99a5800e authored by Aaron Petkau's avatar Aaron Petkau

Updated to correct docker image

parent 6078cf4b
......@@ -11,7 +11,7 @@ Released on **January 23, 2017**.
Install
-------
* Docker - `apetkau/snvphyl-galaxy-1.0.1`
* Docker - `phacnml/snvphyl-galaxy-1.0.1`
* Virtual Machine - [snvphyl-galaxy-1.0.1.zip](https://irida.corefacility.ca/downloads/snvphyl-galaxy/snvphyl-galaxy-1.0.1.zip)
* Galaxy Tools - [suite_snvphyl_1_0_1](https://irida.corefacility.ca/galaxy-shed/view/nml/suite_snvphyl_1_0_1/4841b7148c44)
* Galaxy Workflows
......
......@@ -20,7 +20,7 @@ This assumes that both Python and [Docker][] are installed. If Docker requires
Alternatively, the Docker instance can be launched directly with:
```bash
docker run -d -p 48888:80 apetkau/snvphyl-galaxy-1.0.1
docker run -d -p 48888:80 phacnml/snvphyl-galaxy-1.0.1
```
Once running, SNVPhyl/Galaxy can be accessed from <http://localhost:48888> with username `admin@galaxy.org` and password `admin`. Please see [Usage][] and [Installation][] for more details.
......
......@@ -15,13 +15,13 @@ Running SNVPhyl
Once Docker is installed, the latest version of SNVPhyl can be downloaded and run with:
```bash
docker run -d -p 48888:80 apetkau/snvphyl-galaxy-1.0.1
docker run -d -p 48888:80 phacnml/snvphyl-galaxy-1.0.1
```
This will download and run a docker image with SNVPhyl and Galaxy. By default this will **not persist** data run through SNVPhyl after Docker has been shutdown. To permanently store this data, please run:
```bash
docker run -d -p 48888:80 -v /home/user/galaxy_storage/:/export/ apetkau/snvphyl-galaxy-1.0.1
docker run -d -p 48888:80 -v /home/user/galaxy_storage/:/export/ phacnml/snvphyl-galaxy-1.0.1
```
Where `/home/user/galaxy_storage` as a location where files will be persisted between Docker runs. For more information on how this works, see the [Galaxy Docker][] page.
......@@ -45,7 +45,7 @@ This will show a list of all running docker containers, similar to:
```
CONTAINER ID IMAGE ...
0d56c773a972 apetkau/snvphyl-galaxy-1.0.1 ...
0d56c773a972 phacnml/snvphyl-galaxy-1.0.1 ...
```
This shows all running docker containers and a unique container id. To shutdown the docker container, please use this container id and run the below command.
......
......@@ -10,7 +10,7 @@ To both install Docker and get SNVPhyl, please run:
```bash
curl -sSL https://get.docker.com/ | sh # Installs Docker
docker run -t -p 48888:80 apetkau/snvphyl-galaxy-1.0.1 # Downloads and runs SNVPhyl and Galaxy
docker run -t -p 48888:80 phacnml/snvphyl-galaxy-1.0.1 # Downloads and runs SNVPhyl and Galaxy
```
This will install Docker, download the SNVPhyl Galaxy docker image, and run this image in a Docker container. This will take a while to fully download and start up. You may have to start the `docker` service after installation for Docker to work. This should be a command like `sudo service docker start`, or `sudo systemctl start docker` depending on your system. See the [Docker Install][] guide for more details.
......
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