Commit 5d72d2c5 authored by Aaron Petkau's avatar Aaron Petkau

Removed hard-coded path from stats script

parent 2a8932d0
Pipeline #4228 passed with stage
in 11 seconds
......@@ -26,7 +26,7 @@ du -sh /var/lib/docker/
echo "Memory before SNVPhyl - `date`"
cat /sys/fs/cgroup/memory/docker/$docker_id/memory.stat
/home/aaron/software/snvphyl-galaxy-cli/bin/snvphyl.py --galaxy-url http://localhost:48888 --galaxy-api-key admin --fastq-dir $fastq_dir --reference-file $reference --fastq-files-as-links --output-dir $output_dir > $snvphyl_log &
snvphyl.py --galaxy-url http://localhost:48888 --galaxy-api-key admin --fastq-dir $fastq_dir --reference-file $reference --fastq-files-as-links --output-dir $output_dir > $snvphyl_log &
while [ "`pgrep -f snvphyl.py`" != "" ]
do
......
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