Commit 0e2761d9 authored by Aaron Petkau's avatar Aaron Petkau

Fixed mistake in one of the runtimes

parent 9a1a6239
Pipeline #3964 passed with stage
in 16 seconds
......@@ -9,7 +9,7 @@ The datasets from the [SNVPhyl manuscript][] were run on a single machine using
| Case | Number of genomes | Total size of reads (GB) | Runtime (min) |
|:-----------------------:|:-----------------:|:------------------------:|:-------------:|
| Simulated data | 4 | 1.4 | 16 |
| SNV density filtering | 11 | 13 | 21 |
| SNV density filtering | 11 | 13 | 63 |
| *Salmonella* Heidelberg | 59 | 40 | 192 |
The **Simulated data** case was run using a set of simulated reads through SNVPhyl, based off of *E. coli* str. Sakai (NC_002695) and two plasmids (NC_002128 and NC_002127). The other two cases were run with real-world data. The **SNV density filtering** case was run using a set of 11 *Streptococcus pneumoniae* genomes through SNVPhyl, in particular the runtime presented was recorded when no SNV density filtering was applied. The **_Salmonella_ Heidelberg** case was run using a set of 59 *Salmonella* Heidelberg genomes, and in particular the runtime presented corresponds to the case of using a minimum coverage threshold of 10X while keeping all other parameters at default values.
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