1. 05 Oct, 2015 1 commit
    • Philip Mabon's avatar
      Merge branch 'feature/update-assembly' into 'development' · 681cf353
      Philip Mabon authored
      Feature/update assembly
      This merge request adds the tools **assemblystats**, **filter_spades_repeats**, and **flash**.  I then add a workflow in `workflows/AssemblyAnnotation/0.2/assembly-annotation.ga` which corresponds roughly to the **SOP: Spades assemblies with FLASH v1.2** and **Prokka Workflow v1.0**.  The differences being I combine both into one workflow, and I remove the **bundle** tools since for IRIDA I'm only running one assembly per workflow.
      I also updated the install instructions for how to install all tools and I've put them all on http://irida.corefacility.ca/galaxy-shed which is publicly available.
      Let me know if all these changes make sense (there's a lot of changes since I added all those tool scripts).
      See merge request !2
  2. 07 May, 2015 3 commits
  3. 05 May, 2015 2 commits
  4. 30 Apr, 2015 7 commits
  5. 29 Apr, 2015 5 commits