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galaxy_core_phylogenomics_pipeline
Commit a66f7db3 authored by Philip Mabon's avatar Philip Mabon
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Merge branch 'feature/pipeline-irida' into 'development' 

Updates to pipeline to get working on the irida version of galaxy
parents 034c7bfa 5f6330be
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Showing with 133 additions and 43 deletions
tools/core_pipeline/vcf2pseudoalignment.xml
View file @ a66f7db3
<tool id="vcf2pseudoalignment" name="VCF 2 pseudoalignment" version ="0.0.9">
<tool id="vcf2pseudoalignment" name="VCF 2 pseudoalignment" version ="0.0.10">
<description>create a pseudo alignment from multiple VCFs files</description>
<requirements>
<requirement type="package" version="1.1">core-phylogenomics</requirement>
......@@ -32,7 +32,7 @@
<param name="ambiguous" truevalue="--keep-ambiguous" falsevalue="" type="boolean" checked="false" label="Keep ambiguous base pair"/>
<param name="freebayes_collection" type="data_collection" label="FreeBayes filtered VCF" help="" optional="false" format="vcf" collection_type="list" />
<param name="mpileup_collection" type="data_collection" label="Mpileup VCF" help="" optional="false" format="vcf" collection_type="list" />
<param name="mpileup_collection" type="data_collection" label="Mpileup VCF" help="" optional="false" format="tabular" collection_type="list" />
<param name="numcpus" type="select" label="Number of CPUS" multiple="false" optional="false">
<option value="4">4</option>
<option value="8">8</option>
......
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