Commit a01d29e9 authored by Aaron Petkau's avatar Aaron Petkau

Modified vcf2pseudoalignment.xml to use tabular instead of vcf due to output datatype of samtools

parent 034c7bfa
<tool id="vcf2pseudoalignment" name="VCF 2 pseudoalignment" version ="0.0.9">
<tool id="vcf2pseudoalignment" name="VCF 2 pseudoalignment" version ="0.0.10">
<description>create a pseudo alignment from multiple VCFs files</description>
<requirements>
<requirement type="package" version="1.1">core-phylogenomics</requirement>
......@@ -32,7 +32,7 @@
<param name="ambiguous" truevalue="--keep-ambiguous" falsevalue="" type="boolean" checked="false" label="Keep ambiguous base pair"/>
<param name="freebayes_collection" type="data_collection" label="FreeBayes filtered VCF" help="" optional="false" format="vcf" collection_type="list" />
<param name="mpileup_collection" type="data_collection" label="Mpileup VCF" help="" optional="false" format="vcf" collection_type="list" />
<param name="mpileup_collection" type="data_collection" label="Mpileup VCF" help="" optional="false" format="tabular" collection_type="list" />
<param name="numcpus" type="select" label="Number of CPUS" multiple="false" optional="false">
<option value="4">4</option>
<option value="8">8</option>
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment