Commit 72ef2b9e authored by Aaron Petkau's avatar Aaron Petkau

Added section on needed to setup a better database

parent 3afe87f4
......@@ -3,6 +3,8 @@ Galaxy Core Phylogenomics Pipeline
This contains the Galaxy tool definitions and workflow definitions needed to install the [Core Phylogenomis Pipeline][] into Galaxy. This repository contains two main sections. A set of tools under `tools/` and a workflow implementing the core phylogenomics pipeline under `workflows/`. These can be packaged up and uploaded into a [Galaxy Tool Shed][] and then later installed to an instance of Galaxy. Instructions on how to install your own local Galaxy Tool Shed and Galaxy can be found at [IRIDA Galaxy Setup][].
One small point when setting up Galaxy is that for the pipeline to work properly the default **SQLite** database cannot be used. Instructions on setting up a better database for Galaxy can be found at the [Production Server Setup][] documentation.
Authors
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......@@ -137,6 +139,7 @@ perl -pe 's/"[^"]+?core_pipeline\//"[% LOCAL_REPOSITORY %]\/core_pipeline\//; s/
[Core Phylogenomis Pipeline]: https://github.com/apetkau/core-phylogenomics
[Galaxy Tool Shed]: https://wiki.galaxyproject.org/ToolShed
[Production Server Setup]: https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer
[Testing Installed Tools]: https://wiki.galaxyproject.org/TestingInstalledTools
[IRIDA Galaxy Setup]: https://irida.corefacility.ca/gitlab/irida/irida-install-documentation/tree/master/galaxy
[Automated Tool Tests]: https://wiki.galaxyproject.org/AutomatedToolTests
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