Merge branch 'feature/functional-tests' into 'development'
Feature/functional tests Here's what I have so far for functional tests + documentation for running them. Dataset collections + tests are broken for right now, but at least the other tools have a test that can be run.
Showing with 222 additions and 24 deletions
tools/core_phylogenomics_pipeline/test-data/vcf2pseudoalignment.input.1.invalid_positions.tsv 0 → 100644
tools/core_phylogenomics_pipeline/test-data/vcf2pseudoalignment.input.1.mpileup.v1.vcf.gz 0 → 100644
tools/core_phylogenomics_pipeline/test-data/vcf2pseudoalignment.input.1.mpileup.v2.vcf.gz 0 → 100644